
All Tomorrow's Parties is a science fiction novel by American-Canadian writer William Gibson, the third and final book in his Bridge trilogy. Like its predecessors, All Tomorrow's Parties is a speculative fiction novel set in a postmodern, dystopian, postcyberpunk future. The novel borrows its title from a song by Velvet Underground. It is written in the third person and deals with Gibsonian themes of emergent technology. The novel was initially published by Viking Press on October 7, 1999.

Babylon Babies is the third novel by French-born naturalized Canadian writer Maurice G. Dantec, published in 1999. It follows La Sirène rouge (1993) and Les Racines du mal (1995).

Dark Victory is a novel by William Shatner, co-written with Judith and Garfield Reeves-Stevens, based upon the television series Star Trek. The novel was released in 1999 in hardcover format. This is the second in the "Mirror Universe Saga". The story began with Spectre and concluded with Preserver.

Flashforward is a science fiction novel by Canadian author Robert J. Sawyer first published in 1999. The novel is set in 2009. At CERN, the Large Hadron Collider accelerator is performing a run to search for the Higgs boson. The experiment has a unique side effect; the entire human race loses their consciousness for about two minutes. During that time, nearly everyone sees themselves roughly twenty-one years and six months in the future. Each individual experiences the future through the senses of his or her future self. This "flashforward" results in countless deaths and accidents involving vehicles, aircraft, and any other device needing human control at the time of the experiment. The novel inspired the 2009 television series FlashForward.

Gardens of the Moon is the first of ten novels in Canadian author Steven Erikson's high fantasy series the Malazan Book of the Fallen. It was first published in 1999 and was nominated for a World Fantasy Award.

A Good House is the first novel by Canadian writer Bonnie Burnard, published by Picador in 1999 and later by Henry Holt and Company in United States of America. It was the winner of that year's Scotiabank Giller Prize. The novel narrates the story of a family in three generations, five houses starting from 1949 until 1997.

The Hydrofoil Mystery was written in 1999 by Canadian author Eric Walters. It is about a teenage boy named Billy McCracken whose mother arranges for him to go away for the summer to work with none other than the well-known inventor of the telephone, Alexander Graham Bell. Billy expects his summer to be boring, but with the German U-boats endangering the maritime coast, his work with Bell's hydrofoil becomes an adventure.

In a Dry Season is the tenth novel by Canadian detective fiction writer Peter Robinson in the Inspector Banks series of novels. The novel was first printed in 1999, but has been reprinted a number of times since. The novel is widely acclaimed as Robinson's best, a large step forward in ambition from previous books, and this was reflected in its critical and commercial response. The novel was nominated for the 1999 Hammett Prize, was shortlisted for the American Edgar Award and won the 2000 Anthony Award for 'Best Novel'.

Looking for X is a children's novel written for ages 9–12 by Deborah Ellis. This book is about an eleven-year-old girl named Khyber that lives in a poorer area, Regent Park, in Toronto, Ontario. She lives there with her mother and her twin brothers who are both autistic. One day Khyber shows up at school and is accused of breaking the windows of her teacher's classroom. When she is expelled she sets off in the middle of the night to find her friend X, a homeless woman who lives in the park across the street from her house. She is the only one that can clear Khyber's name. She spends all night wandering the streets in search of X and has the adventure of a lifetime.

No Great Mischief is a 1999 novel by Alistair MacLeod.

The Other Place is a young adult novel written by Monica Hughes, first published in 1999.

Pilgrim is a novel by Timothy Findley, first published by HarperFlamingo in Canada in 1999. The first US edition was published by HarperCollins in 2000. The novel is typical of Findley's interest in Jungian psychology; in fact, Carl Jung himself is a major character.

Prisoner in a Red-Rose Chain is the first novel by Canadian author Jeffrey Moore it won the Commonwealth Writers' Prize for Best First Book in 2000, and has been translated into a dozen different languages.

The Spirit Cabinet is a novel by Paul Quarrington about two oddball Las Vegas magicians. It was first published by Random House of Canada in 1999.

Summer Gone is the first novel by Canadian writer David Macfarlane. Published in 1999 by Knopf Canada, Summer Gone was a national bestseller in Canada. It was nominated for the Giller Prize, and won the Books in Canada First Novel Award.

Sunwing is a children's book written in 1999 by Canadian author Kenneth Oppel. It is the second book in the Silverwing series, preceded by Silverwing and succeeded by Firewing.

Truth and Bright Water is a bildungsroman by Thomas King set in the Canadian Prairies on the Canada–United States border. The novel embeds a number of magical features within painstakingly realist prose, showing its affiliation with Magic realism.

Vigilant is a science fiction novel written by the Canadian author James Alan Gardner, published in 1999 by HarperCollins Publishers under its various imprints. The book is the third volume in Gardner's "League of Peoples" series, after Commitment Hour (1998).