
After School Nightmare is a Japanese shōjo manga series written and illustrated by Setona Mizushiro. It was serialized from 2004 to 2007 in the manga magazine Princess and collected in ten tankōbon volumes. It was licensed in North America by Go! Comi, with all volumes adapted by Mallory Reaves and edited by Brynne Chandler. The story is about Mashiro Ichijo, an intersex high-school student who is forced by a teacher to work out their gender identity in a collective dream, and Mashiro's romantic relationships with two classmates, one female and one male.

Back Street Girls is a Japanese manga series by Jasmine Gyuh. It is about three yakuza men forced by their boss to become a female idol group. It was serialized in Kodansha's seinen manga magazine Weekly Young Magazine from March 2015 to September 2018 and was compiled into 12 volumes. The manga is licensed in English by Kodansha USA. A 10-episode anime television series adaptation, produced by J.C.Staff and directed by Chiaki Kon, aired from July to September 2018 on BS11 and other channels. A live-action adaptation, Back Street Girls: Gokudols, was released in February 2019.

Balance Policy is a science fiction manga series by Akihito Yoshitomi. It was originally just planned as a 6-page story, but was expanded as Yoshitomi saw potential to develop the setting further, and was serialized by Shōnen Gahōsha in 2010–2014 in their magazine Change H; it has since been collected in two tankōbon volumes. A one-shot finale, Tokyo Shoujo , was published in 2016, and was collected in a volume together with Yoshitomi's series Lily System in 2019.

Boku Girl is a Japanese ecchi romantic comedy manga series by Akira Sugito. It was originally serialized by Shueisha in their magazine Weekly Young Jump from December 12, 2013 to May 12, 2016, and has since been collected in eleven tankōbon volumes. A light novel spin-off, Boku Girl: Boku no Arbeit, was released in 2015.

Cheeky Angel is a Japanese manga series written and illustrated by Hiroyuki Nishimori. The story revolves around the adventures of 15-year-old schoolgirl Megumi Amatsuka, a popular and beautiful tomboy that always get into fights with a secret: she used to be a boy. Originally serialized in Weekly Shōnen Sunday, it has been collected into 20 tankōbon volumes.

Claudine is a Japanese shōjo manga series written and illustrated by Riyoko Ikeda. It was serialized in two issues of Shueisha's Weekly Margaret magazine in January 1978 and later published in a single tankōbon volume under the Margaret Comics imprint on May 20, 1978. Seven Seas Entertainment licensed the series for an English-language release in North America, published on June 26, 2018. Claudine is notable for being one of the earliest manga to feature a transgender protagonist.

The Day of Revolution is a Japanese manga written and illustrated by Mikiyo Tsuda. The series was serialized in Shinshokan's manga magazine South between April 1998 and February 2001. The manga is licensed in English by Digital Manga Publishing and has been released in North America in 2006. Two drama CDs based on the series were produced, the first in July 2001 and the second in March 2002. The story mainly focuses around a boy who starts to live as a girl and how his group of friends changes due to his new lifestyle.

Futaba-kun Change is a Japanese manga series written and illustrated by Hiroshi Aro. Fast-paced, madcap and relatively mature in themes, it's usually comedic, with occasional elements of romance. In Japan, the manga began serialization in the December 1990 issue of the Shueisha magazine Monthly Shōnen Jump. It switched to the sister publication Monthly Shōnen Jump Original in 1993 and ended in the March 1997 issue. A total of eight tankōbon collecting the chapters were released by Shueisha between 1991 and 1997, but it is now out of print. Futaba-kun Change was licensed by Studio Ironcat in the United States, but as the company went out of business their release is also out of print.

Gacha Gacha is a shōnen manga by Hiroyuki Tamakoshi. As of November 2008, the first 13 volumes have been published in North America by Del Rey Manga. However, according to the Anime News Network, the series ended in Japan at volume 11 of the second season. The reason for this discrepancy is likely because the series is broken up into two story arcs, essentially two different, unrelated stories, the first being "Capsule", and the second being "Secret". An interview with David Ury, the series' translator for Del Rey, shows that they were planning to release all of both arcs.

IS – Otoko Demo Onna Demo Nai Sei , is a completed drama manga series by Chiyo Rokuhana, first published in Japan in 2003. The IS of the title stands for intersex and the story follows the pain and troubles such people go through in their lives, such as gaining acceptance for who they are and their inability to reproduce.

Ixion Saga Dimensional Transfer is a Japanese anime television series based on the online game Ixion Saga by Capcom. It began airing on October 6, 2012 and ended on March 30, 2013. It also was adapted into two manga series and a light novel series.

Kämpfer is a Japanese light novel series by Toshihiko Tsukiji, with illustrations by Senmu. The series contains 15 volumes published by Media Factory under their MF Bunko J imprint between November 2006 and March 2010. The main series covers 12 volumes, while the remaining three are short story collections. A manga adaptation by Yu Tachibana started serialization in the April 2008 issue of Monthly Comic Alive. A 12-episode anime adaptation aired in Japan between October and December 2009 on TBS, concluded in 2011 with Kämpfer für die Liebe.

Kashimashi: Girl Meets Girl is a Japanese yuri manga series written by Satoru Akahori and illustrated by Yukimaru Katsura. The manga was originally serialized in Dengeki Daioh between the July 2004 and May 2007 issues, and later published in five bound volumes by MediaWorks from January 2005 to May 2007. The story focuses on Hazumu Osaragi, a normal, albeit effeminate high school boy who is killed when an alien spaceship crash lands on him, only to be restored to health as a girl. This results in a same-sex love triangle that Hazumu finds herself in with two of her best female friends.

Love Com , also known as Lovely Complex, is a romantic comedy shōjo manga by Aya Nakahara. It was published by Shueisha in Bessatsu Margaret from 2001 to 2006 and collected in 17 tankōbon volumes. The series is about the romance between a tall girl and a short boy who are treated as a comedy duo by their classmates. In 2004, it received the 49th Shogakukan Manga Award for shōjo.

Love Me for Who I Am is a Japanese manga series by Kata Konayama, first published on 1 June 2018 through COMIC MeDu. The manga is licensed by Seven Seas Entertainment for publication in North America, with the first volume to be published in June 2020.

Magical Girl Ore is a Japanese manga series written and illustrated by Icchokusen Mōkon. It began serialization in Fusion Product's Comic Be magazine in 2012, and was collected in two tankōbon volumes. The series was renewed for serialization in the same magazine in 2014. A 12-episode anime television series adaptation animated by Pierrot+ aired from April 2 to June 18, 2018.

Magical Girl Site is a Japanese magical girl shōnen manga series written and illustrated by Kentarō Satō. The series is about a tormented and withdrawn middle school student named Aya, who gains the ability to become a magical girl through a mysterious website. She soon finds friends, who are also magical girls like herself, that provide her strength. Aya and her friends also face enemies. The magical girls soon discover that the very website that gave them their magic is planning a dark surprise that will threaten all of humankind. The series ends in a climactic race for Aya because she must keep herself and her friends alive.

Majitora! is a magical girl manga series by Yutaka Kashii.

Nabari no Ou is a Japanese manga series written and illustrated by Yuhki Kamatani. The series premiered in Monthly GFantasy in 2004 and ended serialization in 2010. Square Enix is also publishing the individual chapters in collected volumes with fourteen volumes released as of February 2011. The series has been licensed for an English language release in North America by Yen Press. The first volume was released in May 2009.

No Bra is a Japanese teenage boy's romance manga written and illustrated by Kenjiro Kawatsu that was serialized in Weekly Shōnen Champion from 2002 to 2004.

Our Dreams at Dusk is a Japanese manga series written and illustrated by Yuhki Kamatani. The story follows Tasuku Kaname, a gay teenager who meets other LGBT people at a discussion lounge after being involuntarily outed. The manga was serialized in Shogakukan's Hibana magazine from 2015 to 2017 and on the Manga One app from 2017 to 2018. Shogakukan collected the untitled chapters into four bound volumes under the Big Comics Special imprint. Seven Seas Entertainment licensed the series for an English-language release in North America.

Paradise Kiss , abbreviated to "ParaKiss", is a manga series written and illustrated by Ai Yazawa. It appeared as a serial in the Japanese fashion magazine Zipper. Shodensha collected the chapters into five volumes. The series has also been adapted into a 12 episode anime series, produced by Aniplex and Studio Madhouse, and which was aired in Japan on Fuji TV's Noitamina programming block and on the anime television network, Animax, who have broadcast the series across its respective networks worldwide, including Japan, Southeast Asia, South Asia and East Asia.

Princess Knight, also known as Ribon no Kishi, is a Japanese manga series written and illustrated by Osamu Tezuka. This manga follows the adventures of Sapphire, a girl who was born accidentally with a blue heart of a boy and a pink heart of a girl. She pretends to be a male prince to prevent the evil Duke Duralumin from inheriting the throne of Silverland. The gender-bending main character was inspired by the all-female musical theater group Takarazuka Revue in which women performed both female and male roles.

Ranma ½ is a Japanese manga series written and illustrated by Rumiko Takahashi. It was serialized in Weekly Shōnen Sunday from August 1987 to March 1996, with the chapters collected into 38 tankōbon volumes by Shogakukan. The story revolves around a teenage boy named Ranma Saotome who has trained in martial arts since early childhood. As a result of an accident during a training journey, he is cursed to become a girl when splashed with cold water, while hot water changes him back into a boy. Throughout the series Ranma seeks out a way to rid himself of his curse, while his friends, enemies and many fiancées constantly hinder and interfere.

Shangri-La is a Japanese science fiction light novel, written by Eiichi Ikegami and illustrated by Ken'ichi Yoshida. The novel was initially serialized in Kadokawa Shoten's Newtype magazine between April 2004 and May 2005. The chapters were collected into a single bound volume on September 23, 2005, and was later re-released in two volumes by Kadokawa both released on October 25, 2008. A manga series adaptation drawn by Tasuku Karasuma started serialization in Kadokawa's Ace Assault in January 2009, but was later transferred to Shōnen Ace. An anime television series, directed by Makoto Bessho, written by Hiroshi Ōnogi and featuring character designs by Range Murata and animation character designs by Kumi Ishii, premiered in Japan on April 6, 2009.

Simoun is a Japanese anime television series created by Shō Aikawa, Yoshizaki Sasa and Gō Mihara. It ran for 26 episodes on TV Tokyo from April 3 to September 25, 2006.

Stars Align is a Japanese original anime television series written and directed by Kazuki Akane at studio Eight Bit. The series aired from October 10 to December 26, 2019.

Stop!! Hibari-kun! is a Japanese manga series written and illustrated by Hisashi Eguchi. It was serialized in Weekly Shōnen Jump from October 1981 to November 1983, and the chapters were published in four tankōbon volumes by Shueisha from November 1982 to January 1984. The series was adapted into a 35-episode anime television series by Toei Animation that aired on Fuji Television from May 1983 to January 1984. The story focuses on Kōsaku Sakamoto, a high school student who goes to live with yakuza boss Ibari Ōzora and his four children—Tsugumi, Tsubame, Hibari and Suzume—after the death of his mother. Kōsaku is shocked to learn that Hibari, who looks and behaves as a girl, was assigned male at birth.

Takane and Hana is a Japanese shōjo manga series written and illustrated by Yuki Shiwasu. The series has been serialized in Hana to Yume since 2014. The story follows the interactions of 16-year-old Hana Nonomura and 26-year-old Takane Saibara after Hana takes her sister's place in an arranged marriage meeting with Takane. The series received a live-action television series and a drama CD in 2019.

Wandering Son is a Japanese manga series written and illustrated by Takako Shimura. It was originally serialized in Comic Beam from the December 2002 to August 2013 issue, and published in 15 tankōbon volumes by Enterbrain from July 2003 to August 2013. The series is licensed in English by Fantagraphics Books, which released the first volume in North America in July 2011. A 12-episode anime adaptation produced by AIC Classic and directed by Ei Aoki aired in Japan between January and March 2011. Eleven episodes aired on television, with episodes 10 and 11 edited into a single episode, and were released individually on their respective BD/DVD volumes.

Your and My Secret, known in Japan as lit. "My and Her Three X's" , is a manga series by Ai Morinaga. The series was first published in Enix's Monthly Stencil in January 2001, was later obtained by Mag Garden who published it in Monthly Comic Blade then Monthly Comic Avarus where it concluded its serialization in August 2011. The individual chapters were collected and released into eight tankōbon volumes by Mag Garden. A continuation of the manga, subtitled as Extra-Part , was serialized in Mag Garden's online magazine, Web Comic Beat's, between June 2012 and March 2013; it was later released in a single tankōbon volume. In Japan, Boku to Kanojo no Peke Mittsu has been adapted into three radio dramas and a live action film. Your and My Secret follows the effeminate Akira Uehara who switches bodies with the tomboy Nanako Momoi due to an accident.

Zombie Land Saga is an anime television series produced by MAPPA, Avex Pictures and Cygames. The series aired in Japan between October and December 2018. A second season titled Zombie Land Saga Revenge has been announced. A manga adaptation began serialization on Cygames' Cycomi website in October 2018.