Aeduella is an extinct genus of prehistoric bony fish.
Aethalionopsis is an extinct genus of prehistoric bony fish.

Archaeomaene tenuis is an extinct species of Late Jurassic archaeomaenid bony fish from the Talbragar River beds.

Archaeomaenidae is an extinct family of pachycormid fish found in freshwater environments of Jurassic New South Wales of Australia, China, and Antarctica, and in Lower Cretaceous New South Wales and Mongolia.
Atractosteus africanus is a potentially dubious species of gar from the Cretaceous period of Niger and France. The species possibly lived until the end of the Cretaceous, during the Maastrichtian.

Belonostomus or Diphyodus is a genus of prehistoric ray-finned fish that was described by Louis Agassiz in 1844. Fossils range from 99.6 million years ago to 66 million years ago.

Bobasatrania is an extinct genus of prehistoric bony fish that survived the Permian-Triassic extinction event. Fossils of Bobasatrania were found in beds of Lopingian to Anisian age. It was most speciose during the Early Triassic. The genus was named after the locality Bobasatrana in northeast Madagascar, from where the type species was described.
Bolbocara gyrinus is an extinct rattail that lived during the Upper Miocene subepoch of Southern California. It may be related to the extant genus Bathygadus.
Bolcyrus is an extinct genus of prehistoric bony fish that lived from the early to middle Eocene.
Bourbonnella is an extinct genus of ray-finned fish in the family Aeduellidae. It was named by Daniel Heyler in 1969, describing the species B. guilloti. Other species in the genus include B. fourrieri, B. hirsuta, B. jocelynae, and B. sottyi.

Brannerion is an extinct genus of prehistoric bonefish. Fossils of the genus were found in the Romualdo Formation of the Santana Group, Araripe Basin, northeastern Brazil.

Carangopsis is an extinct genus of prehistoric bony fish that lived from the early to middle Eocene.
Charitopsis is an extinct genus of prehistoric bony fish that lived during the lower Cenomanian.

Chibapsetta dolichurostyli is an extinct species of prehistoric right-eye flounder that lived during the Pleistocene epoch in what is now Japan.

Clidoderma is a genus of righteye flounders containing one extant species and two described fossil species from Japan.

Dorypterus is a small, extinct genus of prehistoric ray-finned bony fish. It lived during the Wuchiapingian stage of the upper Permian epoch in what is now Germany (Kupferschiefer) and England. It is a hypsisomatic actinopterygian with a high dorsal fin. Two species have been described, D. hoffmanni and D. althausi, which are distinguished by differences in length of the dorsal fin. However, it is possible that this difference is the result of sexual dimorphism.
Ductor is an extinct genus of prehistoric bony fish that lived from the early to middle Eocene. Fossils have been found in Monte Bolca.

Ebenaqua ritchei is an extinct bobasatraniiform bony fish that lived during the Late Permian epoch, of what is now Blackwater, Queensland. Fossils are found in the Rangal Coal Measures, which are Changhsingian in age.
Eichstaettia is an extinct genus of prehistoric bony fish that lived during the early Toarcian stage of the Early Jurassic epoch.
Eolabroides is an extinct genus of prehistoric bony fish that lived from the early to middle Eocene.

Eophycis is an extinct genus of prehistoric morid gadiform fish that lived during the early Oligocene epoch in the Paratethys ocean in what now the Polish Carpathians.

Eurycormus is an extinct genus of prehistoric bony fish that lived from the Callovian stage of the Middle Jurassic epoch to the early Tithonian stage of the Late Jurassic epoch.
Eutrichiurides is an extinct genus of prehistoric cutlass fish.
Garnbergia is an extinct genus of prehistoric bony fish that lived during the Anisian stage of the Middle Triassic epoch.

Istieus is an extinct genus of prehistoric bony fish that lived from the Santonian to the Campanian.
Legnonotus is an extinct genus of prehistoric bony fish.
Naseus is an extinct genus of surgeonfishes from the Lutetian-aged Monte Bolca Lagerstätte.

Notagogus is an extinct genus of prehistoric bony fish. They can be found in the Solnhofen Plattenkalk.
Palaedaphus is an extinct genus of prehistoric bony fish.
Paramblypterus is an extinct genus of bony fish. This taxon would often fall under predation from Paleozoic Tetrapods such as Sclerocephalus

Piranhamesodon pinnatomus is a pycnodontiform fish from the Late Jurassic. It was described from the Plattenkalk deposits of the Solnhofen Formation, in Bavaria, Germany. It is notable for having sharp, serrated teeth highly reminiscent of a piranha, a highly unusual trait as most other species in the order Pycnodontiformes were shellfish eaters with flat, crushing teeth. It is also the oldest known bony fish with this trait. This unusual combination is reflected in its genus name, which is a combination of piranha and the frequent pycnodontiform genus suffix Mesodon. Fossils of other fish found in the same area have torn fins possibly attributable to this species.
Pleuropholis is an extinct genus of prehistoric bony fish.
Ptycholepis is an extinct genus of prehistoric ray-finned fish having the head and opercular bones ornamented with ridges of ganoin, minute teeth, and thick scales.
Pygaeus is an extinct genus of prehistoric bony fish that lived from the early to middle Eocene period in Italy.
Rhamphognathus is an extinct genus of prehistoric bony fish that lived from the early to middle Eocene.
Saurorhynchus is an extinct genus of carnivorous bony fish. It is the youngest representative of the family Saurichthyidae. This family is known for its large, elongate jaws, similar to modern Belonidae. Saurichthyidae also includes the Permian genus Eosaurichthys and the Triassic genus Saurichthys.

Sinocoelacanthus is an extinct genus of prehistoric coelacanth that lived during the Early Triassic epoch.

Tharrhias is an extinct genus of prehistoric bony fish that lived during the Aptian stage of the Early Cretaceous epoch. The type species T. araripis is named after the Araripe Basin, in which it was found in sediments of the Santana Formation.

Urosphen is an extinct genus of prehistoric bony fish that lived from the early to middle Eocene.
Veronanguilla is an extinct genus of prehistoric bony fish that lived from the early to middle Eocene.
Vinctifer is an extinct genus of prehistoric bony fish erected by David Starr Jordan in 1919.
Voltaconger is an extinct genus of prehistoric bony fish that lived from the early to middle Eocene.