
Batu Pahat River is the river originating from Sungai Simpang Kiri and Sungai Simpang Kanan near Tongkang Pechah, and flows through Batu Pahat and until it reaches the mouth of the river in Pantai Minyak Beku, a seaside village lying on the west coast of Johor, Malaysia.

Dinding River is the major river in Manjung district in Perak, Malaysia.
The Endau River is a river that flows through the Malaysian state of Johor and empties to the South China Sea. The river is the namesake of Endau Rompin National Park which is located to the northeast of Johor.

The Gombak River is a river which flows through Selangor and Kuala Lumpur in Malaysia. It is a tributary of the Klang River. The point where it meets the Klang River is the origin of Kuala Lumpur's name.

Jelai River is a 97.14 km long river in Pahang, Malaysia.

The Johor River is the main river in the Malaysian state of Johor. The river is 122.7 km long with a catchment of 2,636 km² and flows in a roughly north-south direction, originating from Mount Gemuruh and then empties into the Strait of Johor. Its major tributaries are Sayong, Linggiu, Tiram and Lebam Rivers. Its banks are also known to be the location of past capitals of Johor, the Johor Lama. The Sungai Johor Bridge, officially opened in June 2011, is the first bridge to span the river and is currently the longest river bridge in Malaysia.

Kedah River is a river in Kedah, Malaysia. The river passes through Alor Setar and empties into the Straits of Malacca at Kuala Kedah. Its volume is about 3695 km³.
Kemaman River is a river in Terengganu state Malaysia.

Kerian River, alternately Krian, is a river in the northern part of the Malaysian state of Perak. The river originates from the Bintang Range. It flows westerly and discharges into the Straits of Melaka. The main tributaries are Selama River, Ijok River, Samagagah River and Ulu Mengkuang River.
The Kesang River is the border river between Johor and Melaka states in the nation of Malaysia, together with Chohong River.
Kinta River is a river in Perak, Malaysia. It gets its name from the Kinta Valley, which surrounds Ipoh, the capital of Perak. Ipoh sits along this river. There are many limestone hills in the area surrounding the river, and there used to be many tin mines. The supposedly largest tin field in the world was discovered in 1876 in the Kinta Valley. The river was also well known for its wide variety of freshwater fish. The fisheries department reported a greater abundance of fish from the Intake Dam to Tasek, and from a secluded fish pool, 0.75 miles (1.21 km) down from Tanjung Rambutan. Fishing in this area used to be a major local activity until the fisheries gradually closed down.

The Kuantan River is a river in Pahang, Malaysia. It runs from Sungai Lembing through Kuantan City before flowing out to South China Sea.

Langat River is a river in Selangor, Malaysia. The Langat River is 78 km long with a catchment of 2350 km² and originates from the Titiwangsa Range at Gunung Nuang. It drains westward to the Straits of Malacca. The major tributaries of Langat River are the Sungai Semenyih and Sungai Labu.

The Malacca River which flows through the middle of Malacca City in Malacca, Malaysia, was a vital trade route during the heyday of Malacca Sultanate in the 15th century.

The Merbok River is a river in Kedah, Malaysia. Its sources are at Mount Jerai and Sungkap Forest. After the confluence of Bongkok and Lalang River it carry its name. Other tributaries are Petani and Bujang River. The river mouth is around 2.5 km wide.
The Mersing River is a river in Johor state Malaysia. It flows from south to north with a catchment of 270 km². The River mouth is in Mersing and goes to the South China Sea.

Mesilau, named after Mesilau River, is an area situated at approximately 2,000 m (6,562 ft) above sea level on the East Ridge of Mount Kinabalu in Kinabalu National Park, Sabah, Malaysian Borneo. It is the site of the Mesilau Nature Resort, which is owned and operated by Sutera Sanctuary Lodges.

The Muar River is a river which flows through the states of Johor, Negeri Sembilan and Pahang in Malaysia. The river also flows through Muar town.
Muda River is the longest river in Kedah, Malaysia.
The Oya River is a river in Sarawak, Malaysia. The river mouth is located in Kuala Oya, in Mukah Division. The river flows approximately 31 km and has a basin area of 2143.92 km2.

The Padas River is a river in Interior Division, southwestern Sabah of Malaysia. It has a total length of 120 km (75 mi) from its headwaters in the mountains of northwest Sabah to its outlet at the South China Sea, southwest of Beaufort town. Its source is originated from the mountains in the interior Beaufort, Keningau and Tenom Districts, which part of the Crocker Range system.

Perai River is a major river in Penang, Malaysia. It also acts as the mother river of Butterworth and separate it with the Perai and Seberang Jaya suburb.

Perlis River is a river in Perlis, Malaysia.
Pulai River is a river in Johor, Malaysia. It runs from Mount Pulai in Kulai District until Tanjung Pelepas, draining into the Tebrau Straits. At its mouth lies the single largest seagrass bed in Malaysia which extents all the way to Pulau Merambong. Sungai Pulai is also a mangrove forest reserve. The site is under intensive studies to help managing the vast mangrove ecosystem, with assistance from UTM, and UKM, in line with the Integrated Management Plan for the sustainable use of mangroves in Johore.

The Sarawak River is a river in Sarawak, Malaysia. It is an important source of water and transportation for the inhabitants in southwestern Sarawak. It is also used in water-related sport activities such as the annual Sarawak Regatta which attract tourists from all over the world.

The Sedili Besar River is a river in Kota Tinggi District, Johor, Malaysia.

Segget River is a river in Johor, Malaysia. The length of the river is about 4,280 meters. It starts from the current Johor Bahru Chinese Cemetery, through the downtown of Johor Bahru city, and ends at Straits of Johor.

Selangor River is a major river in Selangor, Malaysia. It runs from Kuala Kubu Bharu in the east and empties into the Straits of Malacca at Kuala Selangor in the west.

Tebrau River is a river in Johor, Malaysia.

Tembeling River is a river in Pahang, Malaysia. It is a main tributary of Pahang River.

Terengganu River is a river in Terengganu, Malaysia. Originated from Lake Kenyir, it flows through the state capital of Terengganu, Kuala Terengganu, and flows into the South China Sea. It is bridged by the Sultan Mahmud Bridge, Manir Bridge, Pulau Sekati Bridge and also the latest, Kuala Terengganu Drawbridge in Kuala Terengganu.