
Himeyuri Peace Museum opened in Itoman, Okinawa Prefecture, Japan in 1989. Located within Okinawa Senseki Quasi-National Park, it is dedicated to the Himeyuri Student Corps during the Battle of Okinawa and to the ideal of Peace.
Ishigaki City Yaeyama Museum opened in 1972 in Ishigaki, Okinawa Prefecture, Japan. The collection covers the archaeology, history, art, and folk traditions of Ishigaki and the Yaeyama Islands.

Miyakojima City Museum opened as the Hirara City Museum of History and Folklore (平良市歴史民俗資料館) in Hirara, Okinawa Prefecture, Japan in 1989. Upon the merger of Hirara into Miyakojima in 2005, the museum reopened as the Miyakojima City Museum. It is dedicated to the area's natural history, history, folkways, and culture.

Nago Museum opened in 1984 in Nago, Okinawa Prefecture, Japan. The collection covers natural history as well as cultural history. The collection includes the shell of a giant clam which weighs over two hundred kilograms.

Naha City Museum of History opened in Naha, Okinawa Prefecture, Japan, in 2006. The collection includes the National Treasure Materials relating to the Shō Family of Ryūkyū Kings. The digital museum was launched in 2014.

The Okinawa Prefectural Museum & Art Museum is a museum in the most southern prefecture of Japan. The museum complex in the Omoro-machi area of Naha, the capital city of Okinawa Prefecture. It opened in November 2007, and includes art, history, and natural history museums focusing specifically on Okinawan topics.

Okinawa Prefectural Peace Memorial Museum is a museum in Itoman, Okinawa. It was established on June 11, 1975. The Cornerstone of Peace, a monument similar to the Vietnam Veterans Memorial, is located here.

Ryukyu University Museum (Fūjukan) is a university museum affiliated with the University of the Ryukyus in Nishihara, Okinawa Prefecture, Japan. Of the collection of 160,000 items, which includes zoological type specimens and cultural artefacts such as the remains of the sundial from Shuri Castle and examples of warazan, some fifteen hundred are included in the permanent exhibition.

Tsushima Maru was a Japanese passenger/cargo ship that was sunk by the submarine USS Bowfin during World War II, while carrying hundreds of schoolchildren from Okinawa to Nagasaki.

Urasoe Art Museum opened in 1990 in Urasoe, Okinawa Prefecture, Japan. The collection has a particular focus upon Ryukyu lacquerware.